https://livesys.se/tags/provenance/ Recent content in Provenance on Living Systems_ Hugo en-us Tue, 03 Sep 2024 11:15:02 +0200 https://livesys.se/posts/rewrite-of-scicommander-in-go/ Tue, 03 Sep 2024 11:15:02 +0200 https://livesys.se/posts/rewrite-of-scicommander-in-go/ <p>When I presented a poster about <a href="https://github.com/samuell/scicommander" target="_blank" rel="noopener">SciCommander</a> at the <a href="https://livesys.se/posts/scicommander-0.3/" target="_blank" rel="noopener">Swedish bioinformatics workshop</a> last year, I got a lot of awesome feedback from some great people including Fredrik Boulund, Johannes Alneberg and others, of which I unfortunately lost the names (please shout out if you read this!).</p> <p>(For those new to SciCommander, it is my attempt at creating a tool that can track complete provenance reports also for ad-hoc shell commands, not just those included in a pipeline. The grand plan is also to integrate this provenance tracking with those of popular pipelines, to enable seamless provenance report generation across pipelines and ad-hoc commands).</p> https://livesys.se/posts/provenance-reports-in-scientific-workflows/ Thu, 19 Oct 2017 11:44:00 +0200 https://livesys.se/posts/provenance-reports-in-scientific-workflows/ <!-- raw HTML omitted --> <p>One of the more important tasks for a scientific workflow is to keep track of so called &ldquo;provenance information&rdquo; about its data outputs - information about how each data file was created. This is important so other researchers can easily replicate the study (re-run it with the same software and tools). It should also help for anyone wanting to reproduce it (re-run the same study design, possibly with other software and tools).</p>