https://livesys.se/tags/conferences/ Recent content in Conferences on Living Systems_ Hugo en-us Tue, 03 Sep 2024 11:15:02 +0200 https://livesys.se/posts/rewrite-of-scicommander-in-go/ Tue, 03 Sep 2024 11:15:02 +0200 https://livesys.se/posts/rewrite-of-scicommander-in-go/ <p>When I presented a poster about <a href="https://github.com/samuell/scicommander" target="_blank" rel="noopener">SciCommander</a> at the <a href="https://livesys.se/posts/scicommander-0.3/" target="_blank" rel="noopener">Swedish bioinformatics workshop</a> last year, I got a lot of awesome feedback from some great people including Fredrik Boulund, Johannes Alneberg and others, of which I unfortunately lost the names (please shout out if you read this!).</p> <p>(For those new to SciCommander, it is my attempt at creating a tool that can track complete provenance reports also for ad-hoc shell commands, not just those included in a pipeline. The grand plan is also to integrate this provenance tracking with those of popular pipelines, to enable seamless provenance report generation across pipelines and ad-hoc commands).</p> https://livesys.se/posts/ahc2024/ Fri, 05 Jul 2024 16:23:00 +0200 https://livesys.se/posts/ahc2024/ <p><p class="image"> <img src="dsc_4779_2.jpg?height=320px" alt="Projector screen at the conference" /> </p> </p> <p>I&rsquo;m just back from the <a href="https://www.appliedhologenomicsconference.eu/" target="_blank" rel="noopener">Applied Hologenomics Conference in 2024</a> (See also <a href="https://x.com/search?q=%23AHC2024&amp;src=typed_query" target="_blank" rel="noopener">#AHC2024 on Twitter</a> ) in Copenhagen and thought to reflect a little on the conference and highlight the bits that particularly stuck with me.</p> <p>The first thing I want to say is that a paradigm shift is happening here.</p> <p>I think what is happening here is a step away from the reductionist view of the past that goes beyond the systems biology approach that has been establishing itself during the last 10-20 years.</p>