Random links from the Hadoop NGS Workshop

Some random links from the Hadoop for Next-Gen Sequencing workshop held at KTH in Kista, Stockholm in February 2015.

• UPDATE: Slides and Videos now available !

• Spark notebook

  • Scala notebook

• ADAM

  • By Big Data Genomics

• Tweet by Frank Nothaft on common workflow def

  • Part of Global Alliance for …
  • Another link is ga4gh.org

• Tachyon in-memory file system

• Cuneiform

  • Does support multiple outputs etc
  • Black-box vs. White-box
  • Workflow dependency graph can be dynamically built up while you’re running
  • Can specity tasks in any scripting languages, or in cuneiform itself

• Hi-Way

  • Worklow engine for Hadoop​
  • Can run exported Galaxy workflows